Swirled Pumpkin Cream Cheese Muffins

Ultimate Pumpkin Cream Cheese Muffins: Your Go-To Fall Baking Recipe

Get ready to embrace the flavors of autumn with these incredibly delicious Pumpkin Cream Cheese Muffins! Each bite offers a delightful fusion of moist pumpkin muffin, a tangy, rich cream cheese filling, and pockets of sweet chocolate chips. This isn’t just a muffin; it’s a miniature pumpkin cheesecake experience wrapped in a comforting quick bread. Even the pickiest eaters, including kids, absolutely adore this pumpkin muffin recipe, making it a guaranteed crowd-pleaser for any occasion.

What makes these muffins even better? They’re surprisingly easy to prepare! Plus, with simple adjustments like using whole wheat flour and other wholesome ingredients, you can transform them into healthy pumpkin muffins that you’ll feel great about serving to your family. Prepare to be impressed by how effortlessly these come together, delivering an impressive dessert or breakfast treat every time.

Moist pumpkin cream cheese muffins with a creamy cheesecake filling and sweet chocolate chips, perfect for fall baking

As the leaves begin to turn and the air grows crisp, our thoughts often drift to comforting fall baking. Beyond these delectable pumpkin creations, we also cherish recipes like our moist Zucchini Muffins and classic Banana Bread. Fall truly is the ideal season to utilize all that wonderful canned pumpkin or homemade pumpkin puree derived from winter squash. If you’re seeking more autumnal inspiration, don’t miss our delightful Apple Spice Cake or our fluffy Blueberry Muffins, elevated with a sweet streusel topping.

Pumpkin Muffins with Cream Cheese: A Decadent Twist on a Classic

These aren’t your average pumpkin muffins. Our pumpkin cream cheese muffins recipe elevates the simple quick bread into something truly extraordinary. Imagine the moistness of a perfectly baked cupcake, infused with rich pumpkin and aromatic spices, then filled with a creamy, tangy cheesecake center, all generously sprinkled with sweet chocolate chips. It’s a delightful combination that rivals a slice of pumpkin spice cake with an added cheesecake layer, but in a convenient, individual portion.

The beauty of this recipe lies in its simplicity. The pumpkin batter comes together effortlessly, and the cream cheese filling is just as straightforward. We even incorporate chocolate chips directly into the cream cheese filling, saving you an extra step and ensuring every bite is packed with flavor. This streamlined process makes homemade baking a joy, not a chore.

Pumpkin muffins are inherently perfect for sharing, making them an excellent choice for holiday gatherings, festive potlucks, or any special occasion where you want to impress without stress. Their individual size means no slicing is required, and they present beautifully. For an extra festive touch, simply line your muffin tin with decorative paper liners, which also conveniently eliminates the need for greasing the muffin pans. These pumpkin cheesecake muffins are not only ideal for using up any leftover canned pumpkin this fall season, but they come with a fair warning: they are incredibly addictive! You might find yourself reaching for just one more, and then another.

Close-up of baked pumpkin muffins with a visible swirl of cream cheese and melted chocolate chips

Essential Ingredients for Pumpkin Cream Cheese Muffins

Crafting the perfect pumpkin cream cheese muffin begins with high-quality ingredients. The star of our show, of course, is pumpkin! It’s crucial to use 100% pure canned pumpkin, which is essentially pumpkin puree without any added sugars, spices, or preservatives. Always check the label to ensure you’re getting pure pumpkin, not pumpkin pie filling. Feel free to use your favorite trusted brand for the best flavor.

Array of ingredients laid out for making pumpkin cream cheese muffins, including canned pumpkin, flour, sugar, eggs, oil, cream cheese, and chocolate chips

  • For the Pumpkin Muffins: The base of these delightful muffins comes together quickly with standard baking staples. You’ll need sugar for sweetness, eggs for structure and richness, oil for that coveted moist texture, salt to balance the flavors, baking powder and baking soda for lift, and, of course, a touch of cinnamon to enhance the pumpkin’s natural warmth. While all-purpose flour works perfectly, I personally love using freshly ground soft white wheat for an added boost of nutrition and a wonderfully tender crumb. Don’t worry, the recipe card will include precise adjustments for both flour types.
  • For the Cheesecake Filling: This tangy, creamy heart of the muffin is remarkably simple to prepare. It consists of a block of softened cream cheese, one egg (which helps the filling set beautifully during baking, giving it that true cheesecake texture), a bit of sugar for sweetness, and plenty of delicious chocolate chips. Once these ingredients are combined, you’ll spoon a generous amount into the center of each pumpkin muffin before baking.

Baker’s Tip for a Fuller Filling: If you desire an even more substantial cheesecake layer throughout your muffins, consider doubling the cream cheese mixture. You can then layer the pumpkin batter and cheesecake filling by dolloping alternating spoonfuls into the muffin cups. For an elegant touch and a marbleized design on top, simply swirl the surface gently with a toothpick after adding the filling.

How To Make Pumpkin Muffins with Cream Cheese: Step-by-Step Guide

Making these pumpkin cream cheese muffins is a straightforward process, perfect for bakers of all skill levels. This recipe yields a generous two dozen muffins, so you’ll want to have two muffin pans ready. One of the best parts is the minimal cleanup – you’ll only need two mixing bowls: one for the vibrant pumpkin batter and another for the luscious cream cheese filling. A simple hand mixer is all you need to whip up these delightful treats!

  1. Prepare Your Oven and Pans: Begin by preheating your oven to 350°F (175°C). Next, line all 24 cups of your two muffin pans with paper cupcake liners. This not only makes for easier cleanup but also adds a professional touch to your baked goods. Set the prepared pans aside.
  2. Whip Up the Pumpkin Muffin Batter: In a large mixing bowl, combine all the muffin batter ingredients. For best results and a smooth batter, I recommend starting by beating together the wet ingredients first: the canned pumpkin, sugar, eggs, and oil. Once these are well combined and creamy, gradually add in the dry ingredients (flour, salt, baking powder, cinnamon, and baking soda). Continue to mix until just combined, being careful not to overmix, as this can lead to tough muffins. A hand mixer makes this step quick and easy.
  3. Fill the Liners: Spoon the pumpkin muffin batter evenly into the prepared cupcake liners, filling each approximately 3/4 full. This ensures the muffins have enough room to rise without overflowing.
  4. Create the Cream Cheese Filling: In your second mixing bowl, beat together the softened cream cheese, sugar, and egg until smooth and creamy. Once thoroughly mixed, gently fold in the chocolate chips. This forms the decadent cheesecake-like center of your muffins.
  5. Add the Filling: Place one generous (heaping) teaspoon of the cream cheese and chocolate chip mixture directly into the center of the batter in each muffin cup. The filling will gently sink into the pumpkin batter as it bakes, creating a wonderful surprise in the middle.
  6. Bake to Perfection: Transfer your filled muffin pans to the preheated oven and bake for 15-20 minutes. The muffins are done when a toothpick inserted into the pumpkin portion (not the cream cheese center) comes out clean, and the tops are golden brown and springy to the touch.

To Bake Mini Pumpkin Muffins:

If you prefer smaller, bite-sized treats, mini pumpkin muffins are a fantastic option. Simply spray two mini muffin pans with cooking spray (liners are optional for mini muffins). Fill each tin approximately 3/4 full with the pumpkin batter, then dollop a small teaspoon of the cream cheese filling on top. Bake these at 350°F (175°C) for a shorter duration, typically 10-15 minutes, or until golden and set.

How To Store Pumpkin Muffins for Optimal Freshness

Proper storage is key to enjoying your pumpkin cream cheese muffins for as long as possible. Many wonder, “How long do pumpkin muffins last?” These delightful treats are best enjoyed within 3 days when stored at room temperature. Because the amount of cream cheese in the filling is relatively small and encased within the muffin, refrigeration isn’t strictly necessary for short-term storage, especially in cooler environments. They will retain their wonderful moistness and soft texture for days on your countertop.

However, if you live in a particularly warm or humid climate, or if you prefer an extra layer of caution, refrigerating them is a wise choice to prevent any potential bacterial growth. To keep them fresh and prevent them from drying out, always store your pumpkin muffins in an airtight container. I highly recommend using my trusted airtight Tupperware container, which also makes them super convenient for transporting to potlucks or picnics.

Can You Freeze Pumpkin Cream Cheese Muffins? Absolutely!

Yes, these pumpkin cream cheese muffins freeze beautifully, making them an excellent candidate for meal prep or for stashing away a quick breakfast or snack for a busy day. Freezing is a fantastic way to extend their shelf life and ensure you always have a delicious treat on hand.

How To Freeze Pumpkin Muffins:

  1. First, ensure your baked muffins have cooled completely to room temperature. This is crucial to prevent ice crystals from forming.
  2. Individually wrap each cooled muffin tightly in plastic wrap. This extra layer of protection helps prevent freezer burn and preserves their flavor and texture.
  3. Once individually wrapped, place 6-9 muffins into a large, freezer-safe gallon bag. Squeeze out as much air as possible before sealing. Alternatively, you can use an airtight freezer-safe container.
  4. Label the bag or container with the date.
  5. Freeze for up to 3 months.
  6. To Thaw: When you’re ready to enjoy them, simply remove the desired number of muffins from the freezer. Allow them to thaw completely at room temperature for a few hours, or you can gently warm them in the microwave for 20-30 seconds for a fresh-out-of-the-oven feel.

Having a batch of these frozen muffins means you’re always prepared for unexpected guests, school lunch additions, or a delightful treat whenever the craving strikes.

Frequently Asked Questions (Q&A)

Can I make gluten-free Pumpkin Muffins?

Yes, you certainly can! This pumpkin cream cheese muffin recipe is adaptable for a gluten-free diet. Simply substitute the traditional flour with a high-quality gluten-free all-purpose flour mix. For best results, use approximately 345 grams or 2 3/4 cups of gluten-free flour. Keep in mind that different gluten-free flour blends can absorb liquid differently, so minor adjustments to the wet ingredients might be needed to achieve the perfect batter consistency.

Can I use fresh pumpkin puree instead of canned?

Absolutely! Using fresh, homemade pumpkin puree can add an extra layer of flavor. Just ensure your fresh puree is thick and well-drained to avoid adding too much moisture to the batter, which could make the muffins too dense. If it seems too watery, you might gently simmer it on the stove to reduce some of the moisture before using.

What other spices can I add to the pumpkin muffins?

While cinnamon is classic, you can enhance the spice profile by adding other warm spices. A blend of pumpkin pie spice (which typically includes cinnamon, nutmeg, ginger, and cloves) works wonderfully. You could also add a pinch of allspice or cardamom for a unique twist. Start with 1/2 to 1 teaspoon of your chosen additional spices and adjust to your preference.

How can I prevent the cream cheese filling from sinking to the bottom?

To help prevent the filling from sinking, ensure your muffin batter is thick enough to support the cream cheese. Also, make sure the cream cheese filling itself is firm enough – don’t let it be too runny. Placing a small amount of pumpkin batter in the cup first, then adding the cream cheese filling, and finally topping with a bit more pumpkin batter can also help keep it centered.

Expert Tips for the Best Pumpkin Cream Cheese Muffins

  1. Embrace Whole Grains: This recipe was originally designed for 2 cups of white flour, but I’ve successfully converted it to use whole grain flour! If you’re keen on milling your own, I highly recommend using freshly milled soft white wheat for its tender texture and added nutritional benefits. It’s incredibly rewarding to make whole-wheat pumpkin muffins for my family, and the children genuinely love them!
  2. Chocolate Chip Choice: For the most harmonious flavor, pumpkin chocolate chip muffins truly shine with either semi-sweet or milk chocolate chips. These varieties melt beautifully and provide a balanced sweetness against the pumpkin and cream cheese.
  3. Starbucks Copycat Variation: Craving that iconic Starbucks pumpkin cream cheese muffin? Simply omit the chocolate chips from the recipe. Instead, garnish the exposed cheesecake filling on top of each muffin with about 1 tablespoon of toasted pumpkin seeds before baking. This adds a lovely crunch and nutty flavor reminiscent of the popular coffee shop treat.
  4. Batch Baking for Convenience: This recipe makes 2 dozen muffins, which is perfect for freezing! Make a hefty batch of these Pumpkin Cream Cheese Muffins and store them in the freezer. They make an incredibly easy and satisfying midday snack or a quick grab-and-go breakfast on busy mornings.
  5. For a Healthier Touch: To further enhance the healthfulness of these muffins, consider using organic whole wheat flour, organic cane sugar, and non-GMO sunflower oil. These ingredient choices contribute to a better-for-you treat without compromising on taste or texture.
  6. Don’t Overmix: When combining the wet and dry ingredients for the muffin batter, mix until just combined. Overmixing can develop the gluten in the flour, resulting in tough, chewy muffins rather than light and tender ones. A few lumps are perfectly fine!
  7. Room Temperature Ingredients: Ensure your eggs and especially your cream cheese are at room temperature. This allows them to blend smoothly and incorporate evenly into the batter and filling, preventing lumps and ensuring a uniform texture.

More Delicious Fall Baking Recipes to Explore

If you’ve loved these pumpkin cream cheese muffins, you’ll surely enjoy these other comforting and delicious baking recipes perfect for the fall season and beyond:

  • Super Moist Banana Chocolate Chunk Muffins
  • Dunkin Donuts Glazed Donuts Recipe (Copycat)
  • Classic Oatmeal Raisin Cookies
  • Moist Lemon Pound Cake Recipe (Starbucks copycat indulgence)
  • Easy Applesauce Muffins

More Hearty Winter Squash Recipes

Beyond sweet treats, winter squash offers incredible versatility for savory dishes too. Here are some more delicious ways to incorporate winter squash into your cooking:

  • Fluffy Squash Dinner Rolls
  • Delicious Zucchini Fritters (VIDEO)
  • Fluffy Pumpkin Waffles
  • Moist Carrot Zucchini Cake

We hope you thoroughly enjoy baking and savoring these easy pumpkin cream cheese muffins. Their irresistible combination of flavors and textures makes them an instant favorite. Once you’ve tried them, please be sure to come back and leave a comment with your thoughts and perhaps even share a photo review below! Your feedback helps other bakers discover and enjoy this wonderful recipe.

Delicious pumpkin cream cheese muffins with cheesecake filling and chocolate chips, ready to eat
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Pumpkin Cream Cheese Muffins

Prep Time: 30 minutes
Cook Time: 20 minutes
Total Time: 50 minutes
Servings: 24 muffins
Pumpkin Cream Cheese Muffins filled with a tangy cream cheese filling and sweet chocolate chips! These moist pumpkin muffins with a cheesecake middle are sure to impress, everyone loves this pumpkin muffin recipe even kids!  It’s so easy to make and I make them into healthy pumpkin muffins by using whole wheat flour and better-for-you ingredients!

Equipment

  • 2 large mixing bowls (one for the muffin batter and one for the cheesecake filling)
  • 1 electric hand mixer
  • 2 standard muffin pans (12-cup each)

Ingredients

Muffin Batter Ingredients:

  • 15 oz canned pumpkin (100% pure pumpkin puree)
  • 2 cups granulated cane sugar
  • 4 large eggs
  • 3/4 cup sunflower oil (or other neutral oil like vegetable or canola oil)
  • 1 tsp salt
  • 1 tsp baking powder
  • 1 tsp ground cinnamon
  • 2 tsp baking soda
  • 2 3/4 cup freshly milled soft white wheat (or use 2 cups of all-purpose flour for a lighter muffin)

Cream Cheese Filling:

  • 8 oz cream cheese (full-fat, softened to room temperature)
  • 1 large egg
  • 1/3 cup granulated cane sugar
  • 1 cup semi-sweet chocolate chips

Instructions

Directions:

  • Prepare muffin pans by lining them with cupcake liners for pumpkin cream cheese muffins
    Preheat the oven to 350°F (175°C). Line two standard 12-cup muffin pans with 24 paper cupcake liners and set aside.
  • Prepared pumpkin muffin batter in a mixing bowl
    In a large mixing bowl, beat together the canned pumpkin, sugar, eggs, and oil first with an electric hand mixer until well combined. Then, add in the dry ingredients: salt, baking powder, cinnamon, and baking soda, along with your chosen flour. Beat until just incorporated, being careful not to overmix.
  • Filling cupcake liners with pumpkin batter for muffins
    Fill each cupcake liner 3/4 full with the pumpkin batter.
  • Cream cheese filling with chocolate chips for pumpkin muffins
    Prepare the cream cheese filling: In a separate bowl, beat together the softened cream cheese, sugar, and egg until smooth. Gently fold in the semi-sweet chocolate chips.
  • Pumpkin muffins topped with cream cheese filling and chocolate chips, ready for baking
    Put one heaping teaspoon of the cream cheese mixture into the center of each muffin cup, on top of the pumpkin batter.
  • Freshly baked pumpkin cream cheese muffins cooling on a wire rack
    Bake for 15-20 minutes in the preheated oven, or until a toothpick inserted into the pumpkin muffin portion comes out clean.

Nutrition per serving

Serving: 1 muffinCalories: 283kcalCarbohydrates: 36gProtein: 4gFat: 14gSaturated Fat: 5gPolyunsaturated Fat: 1gMonounsaturated Fat: 8gTrans Fat: 0.01gCholesterol: 44mgSodium: 233mgPotassium: 137mgFiber: 2gSugar: 23gVitamin A: 2938IUVitamin C: 1mgCalcium: 34mgIron: 2mg